Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0806267.1d.2b.1a with 7 members (mental retardation)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Neopterygii / Teleostei / Clupeocephala / Euteleosteomorpha / Acanthomorphata / Percomorphaceae / Ovalentaria / Atherinomorphae /

Cyprinodontiformes /

Completeness score: 1.00

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This HOG has 62 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0806267.1d.2b.1a	730	140	mental retardation
2	HOG:E0806267.1d.2h	84	16	mental retardation
3	HOG:E0806267.1d.2g.4b	58	15	mental retardation
4	HOG:E0806267	49	638	mental retardation
5	HOG:E0806267.1d.2f.3c	45	55	mental retardation
6	HOG:E0806267.1d.2b.1a.2b	21	3	mental retardation
7	HOG:E0806267.1d.2b	20	488	mental retardation
8	HOG:E0806267.1d.2b.1a.3b	19	5	mental retardation
9	HOG:E0806267.1d.2c	16	3	mental retardation
10	HOG:E0806267.1d.2b.1a.2a	14	2	mental retardation
11	HOG:E0806267.1d.2b.1a.1b	13	2	mental retardation
12	HOG:E0505907	12	4	mental retardation
13	HOG:E0806267.1d.2f	11	87	mental retardation
14	HOG:E0806267.1d.2b.1a.1a	10	4	mental retardation
15	HOG:E0806267.1c	10	4	mental retardation
16	HOG:E0806267.1d.2f.3a.6a	8	2	mental retardation
17	HOG:E0806267.1d.2g.4b.11b	7	1	mental retardation
18	HOG:E0806267.1d.2g.4b.11a	7	1	mental retardation
19	HOG:E0806267.1d.2b.1b	7	341	mental retardation
20	HOG:E0806267.1d.2b.1a.4b	7	1	mental retardation
21	HOG:E0806267.1d.2b.1a.3a	7	2	mental retardation
22	HOG:E0806267.1d.2b.1a.1a.1b	7	1	mental retardation
23	HOG:E0806267.1d.2b.1a.1a.1a	7	1	mental retardation
24	HOG:E0806267.1d	7	624	mental retardation
25	HOG:E0142685	7	7	Agenet-like domain-containing protein

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